restructure: proper project layout, README, kill training

- cuda/ — main LBM kernel (khra_gixx_1024_v5.cu)
- navigator/ — lattice_observer, golden_weave, bridges, mock daemon
- scripts/ — compile, start, launch, setup (paths updated)
- docs/ — system manual
- archive/ — everything else (old kernels, inquiries, experiments)
- README.md — full setup guide: requirements, quick start, use your own LLM
- removed training/ entirely (broken LoRA scripts + datasets)
- .gitignore: exclude build/ logs/ training/ *.jsonl

archive/misc/periodic_table_sweep.sh

@@ -0,0 +1,75 @@
+#!/bin/bash
+# Periodic Table Sweep - Direct curl to Navigator API
+# No Python, no extension server, no approval needed
+
+OBSERVER_URL="http://127.0.0.1:28820"
+OUTPUT_DIR="/mnt/d/fractal-brain/beast-build/sweep_results"
+mkdir -p "$OUTPUT_DIR"
+
+# Parameter grid
+AMPLITUDES=(0.02 0.04 0.06 0.08 0.10)
+RADII=(10 15 20 25)
+LOCATIONS=("512 512" "400 400" "600 600" "300 500" "700 500")
+N_INJECTIONS=(3 5 7)
+
+echo "Starting periodic table sweep..."
+echo "Results will be saved to: $OUTPUT_DIR"
+echo ""
+
+# Function to send injection command
+send_injection() {
+    local x=$1
+    local y=$2
+    local radius=$3
+    local amplitude=$4
+    local n_inj=$5
+    local run_id=$6
+    
+    echo "Run $run_id: loc=($x,$y) r=$radius amp=$ampl injections=$n_inj"
+    
+    # Send injection command
+    curl -s -X POST "$OBSERVER_URL/ask" \
+        -H "Content-Type: application/json" \
+        -d "{\"question\":\"CMD: inject_density $x $y $radius $amplitude\",\"sender\":\"SWEEP\"}" \
+        > "$OUTPUT_DIR/run_${run_id}_inject.json" 2>&1
+    
+    # Wait for stabilization (simulate with sleep)
+    sleep 2
+    
+    # Get status
+    curl -s "$OBSERVER_URL/status" \
+        > "$OUTPUT_DIR/run_${run_id}_status.json" 2>&1
+    
+    echo "  Saved to run_${run_id}_*.json"
+}
+
+# Counter
+run_num=0
+
+# Main sweep loop
+for amp in "${AMPLITUDES[@]}"; do
+    for rad in "${RADII[@]}"; do
+        for loc in "${LOCATIONS[@]}"; do
+            for ninj in "${N_INJECTIONS[@]}"; do
+                run_num=$((run_num + 1))
+                
+                # Parse location
+                x=$(echo $loc | cut -d' ' -f1)
+                y=$(echo $loc | cut -d' ' -f2)
+                
+                # Perform n injections
+                for ((i=1; i<=ninj; i++)); do
+                    send_injection $x $y $rad $amp $ninj "${run_num}_${i}"
+                    sleep 1
+                done
+                
+                # Wait between parameter sets
+                sleep 3
+            done
+        done
+    done
+done
+
+echo ""
+echo "Sweep complete. $run_num runs performed."
+echo "Results in: $OUTPUT_DIR"