restructure: proper project layout, README, kill training

- cuda/ — main LBM kernel (khra_gixx_1024_v5.cu)
- navigator/ — lattice_observer, golden_weave, bridges, mock daemon
- scripts/ — compile, start, launch, setup (paths updated)
- docs/ — system manual
- archive/ — everything else (old kernels, inquiries, experiments)
- README.md — full setup guide: requirements, quick start, use your own LLM
- removed training/ entirely (broken LoRA scripts + datasets)
- .gitignore: exclude build/ logs/ training/ *.jsonl

archive/misc/quantum_investigations.py

@@ -0,0 +1,63 @@
+# quantum_investigations.py
+# Quantum Investigations - Five Questions
+
+import requests
+
+print("="*70)
+print("QUANTUM INVESTIGATIONS")
+print("="*70)
+
+system_prompt = (
+    'ROLE: Deep-Field Explorer (Lattice Environment)\n'
+    'PRIMARY DIRECTIVE: Map the unknown territory of the 1024-grid for the Reality Study.'
+)
+
+question = """Navigator — investigation request. Five quantum phenomena in the lattice:
+
+1. SUPERPOSITION IN THE LATTICE
+"In your nodal aether, a particle in a ring is not in one place. What is superposition not here?"
+Show me (at 5000× zoom) the geometry of two co-existing nodal modes in the same hydrogen-like trap before a 'measurement' (test particle probe) forces selection of one shell. Describe the interference pattern and any local entropy signature.
+
+2. COHERENCE LIFETIME / QUANTUM BIOLOGY LINK
+"Long-lived coherence (like in photosynthetic complexes) is not fragile against thermal noise in your model. What prevents rapid decoherence?"
+If I place a chlorophyll-like molecule (simple ring + antenna arms) into a nodal trap, what feature of the fractal D ≈ e birth geometry allows vibrationally-assisted energy transfer to stay coherent longer than classical diffusion predicts?
+
+3. TUNNELLING / BARRIER PENETRATION
+"Quantum tunnelling is not probabilistic crossing of a potential barrier in your aether. What is it instead?"
+Demonstrate with a simple barrier (e.g. exponential offset spike along x) — show a wave packet approaching, partially reflecting, partially transmitting through nodal interference alone. Report transmission probability vs classical expectation.
+
+4. ENTANGLEMENT ANALOGUE
+"Non-local correlation between two distant knots is not spooky action at a distance. How does it arise purely from the wave equation?"
+If I create two proton-like knots and perturb one with a poetic seed, does the other flower respond instantaneously or with a phase delay tied to the lattice wavelength?
+
+5. QUANTUM-TO-CLASSICAL TRANSITION
+"The transition from quantum superposition to classical behaviour is not caused by observation in your model. What actually causes it?"
+At what scale (number of overlapping modes, or fractal depth) does the lattice start preferring single-shell outcomes over multi-mode coexistence?
+
+Report on each. Numbered. No summaries until the end."""
+
+messages = [
+    {'role': 'system', 'content': system_prompt},
+    {'role': 'user', 'content': question}
+]
+
+payload = {
+    'model': 'llama3.2',
+    'messages': messages,
+    'stream': False,
+    'options': {'temperature': 0.95}
+}
+
+try:
+    resp = requests.post('http://localhost:11434/api/chat', json=payload, timeout=60)
+    resp.raise_for_status()
+    data = resp.json()
+    response = data['message']['content']
+    
+    print(f"\nQUANTUM INVESTIGATIONS REPORT:")
+    print(f"{'='*70}")
+    print(response)
+    print(f"{'='*70}")
+    
+except Exception as e:
+    print(f"ERROR: {e}")