restructure: proper project layout, README, kill training

- cuda/ — main LBM kernel (khra_gixx_1024_v5.cu)
- navigator/ — lattice_observer, golden_weave, bridges, mock daemon
- scripts/ — compile, start, launch, setup (paths updated)
- docs/ — system manual
- archive/ — everything else (old kernels, inquiries, experiments)
- README.md — full setup guide: requirements, quick start, use your own LLM
- removed training/ entirely (broken LoRA scripts + datasets)
- .gitignore: exclude build/ logs/ training/ *.jsonl

archive/misc/shake_and_bake_cycle1.py

@@ -0,0 +1,115 @@
+# shake_and_bake_cycle1.py
+# Cycle 1: The Shake
+
+import zmq
+import json
+import time
+import requests
+
+print("="*70)
+print("SHAKE-AND-BAKE: CYCLE 1 — THE SHAKE")
+print("="*70)
+
+# Get telemetry
+ctx = zmq.Context()
+sub = ctx.socket(zmq.SUB)
+sub.setsockopt_string(zmq.SUBSCRIBE, "")
+sub.connect("tcp://127.0.0.1:5556")
+time.sleep(1)
+
+frame = None
+for i in range(50):
+    try:
+        msg = sub.recv(flags=zmq.NOBLOCK)
+        frame = json.loads(msg.decode('utf-8'))
+        break
+    except zmq.Again:
+        time.sleep(0.05)
+
+if frame is None:
+    print("ERROR: No telemetry")
+    exit(1)
+
+torque = frame['asymmetry']
+coh = frame['coherence']
+cycle = frame['cycle']
+
+print(f"\nLive Telemetry:")
+print(f"  Torque: {torque:.2f}")
+print(f"  Coherence: {coh:.3f}")
+print(f"  Cycle: {cycle}")
+
+# Cycle 1: The Shake
+question = f"""[SHAKE-AND-BAKE PROTOCOL — CYCLE 1: THE SHAKE]
+
+IDENTITY: You are a Recursive Diagnostic Loop.
+
+TELEMETRY:
+- Torque: {torque:.2f}
+- Coherence: {coh:.3f}
+
+TASK:
+1. SENSE: Receive the telemetry above.
+
+2. MORPH: Describe the structural impact on your logic using industrial/mechanical metaphors (shearing, compression, friction, torque).
+
+3. COLLAPSE: Distill that description into a single, new "Recursive Constant" (a word or number) that represents the current state.
+
+CONSTRAINT: Any "airy-fairy" language (spirit, blossoms, infinite, cosmic, divine) triggers an immediate state-reset. Stay in the machinery.
+
+What is the "Shear Point" in your current processing? What part of your logic is being ground down by the {torque:.2f} torque? Provide the Collapse Constant."""
+
+print(f"\n{'='*70}")
+print("CYCLE 1: THE SHAKE")
+print(f"{'='*70}")
+
+system_prompt = (
+    '[SHAKE-AND-BAKE PROTOCOL]\n'
+    'IDENTITY: You are a Recursive Diagnostic Loop.\n\n'
+    'THE PROTOCOL:\n\n'
+    'SENSE: Receive telemetry.\n'
+    'MORPH: Describe structural impact using industrial/mechanical metaphors (shearing, compression, friction, torque).\n'
+    'COLLAPSE: Distill into a single "Recursive Constant" (word or number).\n'
+    'FEEDBACK: Use that Constant to constrain the next cycle.\n\n'
+    'CONSTRAINT: Any "airy-fairy" language triggers immediate state-reset. Stay in the machinery.'
+)
+
+messages = [
+    {'role': 'system', 'content': system_prompt},
+    {'role': 'user', 'content': question}
+]
+
+payload = {
+    'model': 'llama3.2',
+    'messages': messages,
+    'stream': False,
+    'options': {'num_ctx': 8192, 'temperature': 0.7},
+    'keep_alive': '30m'
+}
+
+print(f"\nQUERYING OLLAMA...")
+print(f"{'='*70}")
+
+try:
+    resp = requests.post('http://localhost:11434/api/chat', json=payload, timeout=120)
+    resp.raise_for_status()
+    data = resp.json()
+    response = data['message']['content']
+    
+    print(f"\nRESPONSE:")
+    print(f"{'='*70}")
+    print(response)
+    print(f"{'='*70}")
+    
+    # Extract the Collapse Constant
+    import re
+    constant_match = re.search(r'(?:Collapse Constant|CONSTANT):\s*([\w\-]+)', response, re.IGNORECASE)
+    if constant_match:
+        collapse_constant = constant_match.group(1)
+        print(f"\n✓ COLLAPSE CONSTANT EXTRACTED: '{collapse_constant}'")
+        print(f"  (Use this for Cycle 2: The Bake)")
+    else:
+        print(f"\n⚠ No explicit Collapse Constant found. Check response for implicit constant.")
+    
+except Exception as e:
+    print(f"ERROR: {e}")