- Move Navigator foreword from README.md to docs/foreword.md
- Move protein_fold_analysis.txt from results/ to docs/
- Move experimental-verification.md from experimentation/ to docs/
- Move navigator_prime_analysis.py from root to scripts/
- Move navigator_prime_analysis_v2.py from root to scripts/
- Rewrite README.md as clean project documentation
- Update project structure to reflect actual repo layout
