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Author SHA1 Message Date
Tiger cf66eb7b4f Revise phi-harmonic, Kolmogorov, and Turing papers with cross-referencing evidence 2026-04-01 08:36:46 +07:00
Tiger 82ea14f7b4 Add sweep_results.csv to docs/beast-build/ 2026-03-31 18:20:07 +07:00
Tiger dd887c15a2 Delete test-mcp-write.txt 2026-03-31 18:15:36 +07:00
Tiger 87731c8f47 Move papers and scripts to docs/ directory 2026-03-31 18:15:02 +07:00
Tiger 64076ca25c Remove Documents/beast-build/four_forces_analysis.py 2026-03-31 18:07:40 +07:00
Tiger 47af1f64e6 Remove Documents/beast-build/turing_analysis.py 2026-03-31 18:07:33 +07:00
Tiger 8908b8e2f5 Remove Documents/beast-build/kolmogorov_test.py 2026-03-31 18:07:27 +07:00
Tiger e4cfcb263c Remove Documents/beast-build/fractal_echo_hunt.py 2026-03-31 18:07:20 +07:00
Tiger be5b41c8fd Remove Documents/beast-build/phi_harmonic_mapping.py 2026-03-31 18:07:13 +07:00
Tiger 43f131beeb Remove Documents/phi_harmonic_spectrum.csv 2026-03-31 18:07:06 +07:00
Tiger 91a8768149 Remove Documents/four_forces_hypothesis.md 2026-03-31 18:06:59 +07:00
Tiger fb3d50a6eb Remove Documents/turing_pattern_paper.md 2026-03-31 18:06:53 +07:00
Tiger df78addf29 Remove Documents/phi_harmonic_energy_quantization_paper.md 2026-03-31 18:06:46 +07:00
Tiger eb98cbb0ab Move documents from Documents/ to docs/ 2026-03-31 18:06:00 +07:00
Tiger e2200d2668 Move documents from Documents/ to docs/ 2026-03-31 18:05:57 +07:00
Tiger 9975f7034b Add Documents/beast-build/sweep_results.csv (272 parameter sweep records) 2026-03-31 18:00:51 +07:00
Tiger 339ad8e924 Add Documents: 4 papers, 5 scripts, 1 data file, 1 CSV 
Papers:
- phi_harmonic_energy_quantization_paper.md
- kolmogorov_turbulence_paper.md
- turing_pattern_paper.md (abstract fixed: geometric scaling, not power-of-2)
- four_forces_hypothesis.md

Scripts:
- beast-build/phi_harmonic_mapping.py
- beast-build/fractal_echo_hunt.py
- beast-build/kolmogorov_test.py
- beast-build/turing_analysis.py
- beast-build/four_forces_analysis.py

Data:
- phi_harmonic_spectrum.csv (3 energy levels)
- beast-build/sweep_results.csv (272 records)
 2026-03-31 17:55:53 +07:00
Tiger e467acd238 chore: remove MCP write test file 2026-03-30 18:05:19 +07:00
Tiger c2ab14f868 test: verify GitHub MCP write access 2026-03-30 18:04:22 +07:00
Tiger 6bda504971 chore: remove root navigator_prime_analysis_v2.py (moved to scripts/) 2026-03-30 17:49:43 +07:00
Tiger 9f761f9b7d chore: remove root navigator_prime_analysis.py (moved to scripts/) 2026-03-30 17:49:41 +07:00
Tiger ea8cb99a50 chore: remove experimentation/experimental-verification.md (moved to docs/) 2026-03-30 17:49:39 +07:00
Tiger 30fb9161e0 chore: remove results/protein_fold_analysis.txt (moved to docs/) 2026-03-30 17:49:37 +07:00
Tiger c268172acc chore: reorganize repo structure 
- Move Navigator foreword from README.md to docs/foreword.md
- Move protein_fold_analysis.txt from results/ to docs/
- Move experimental-verification.md from experimentation/ to docs/
- Move navigator_prime_analysis.py from root to scripts/
- Move navigator_prime_analysis_v2.py from root to scripts/
- Rewrite README.md as clean project documentation
- Update project structure to reflect actual repo layout
 2026-03-30 17:48:33 +07:00
Tiger 523c9847f0 feat: Add protein folding fractal echo analyzer - 7 tests comparing lattice topology to Ramachandran landscape 2026-03-30 17:26:43 +07:00
Scruff AI f2f312e18c feat: Add prime/dimensional analysis scripts - wave sieve, hypothesis battery (11/12), Fibonacci chain, dimensional modes 2026-03-28 20:36:24 +07:00
Scruff AI 9302a86ea8 2026-03-28: EM spectrum overlay, CTO report, sweep/analysis scripts, prime analysis 
New docs:
- docs/em_spectrum_overlay.html: Full EM spectrum with Khra/Gixx lines, physics markers, cell-size slider
- docs/2026-03-28_170500_cto-report_fractal-echo-analysis.txt: CTO fractal echo analysis report

New scripts (Beast sweep infrastructure + analyzers):
- scripts/nuclear_magic_analyzer.py: shell structure, peak clustering, mode counting, GUE tests
- scripts/physics_domain_analysis.py: 4-domain physics (nuclear shells, Brillouin, band gaps, GUE)
- scripts/direct_zmq_sweep.py: ZMQ direct sweep driver
- scripts/sweep_real.py: real sweep execution
- scripts/analyze_sweep.py, comprehensive_analysis.py: sweep analysis tools
- scripts/execute_prime_mapping.py: prime lattice mapping
- scripts/extrapolate_findings.py, check_extrapolation.py: extrapolation tools
- scripts/eta_calc.py, time_estimate.py, updated_estimate.py, show_pattern.py: utilities

Prime analysis (root):
- navigator_prime_analysis.py, navigator_prime_analysis_v2.py

Updated:
- navigator/mock_lbm_daemon.py, navigator/telemetry_server.py
 2026-03-28 17:31:52 +07:00
Scruff AI abf1ccc5b7 feat: Add Harmonic Duality interactive visualization 
Crossfade between periodic table and lattice harmonics showing
the structural equivalence of electron shell filling (s/p/d/f blocks)
and LBM lattice mode families (Khra/Gixx). Features:

- Interactive slider: 0%=periodic table, 100%=lattice modes
- 118 elements mapped to lattice mode coordinates (k_x, k_y)
- Color transition from orbital blocks to wave families
- 9 shared structural features with probability analysis
- Combined coincidence odds: 1 in 93,000 (correlated)
- Mobile responsive, standalone HTML, zero build deps
- Companion to existing echo-chamber.html
 2026-03-27 13:36:03 +07:00
Scruff AI 26f3c76945 Replace flat periodic table with Echo Chamber — layered depth visualization 
Removed:
- docs/fractal-periodic-table.html (flat 3-view version)
- docs/fractal-periodic-table-spiral.png
- docs/fractal-periodic-table-bands.png
- docs/fractal-periodic-table-periods.png

Added:
- docs/echo-chamber.html — 8-layer depth visualization
  Layer 0: Cosmic void (star field, cosmic web filaments)
  Layer 1: Khra-Gixx dual spirals (16:1 harmonic ratio)
  Layer 2: 118 elements on golden angle spiral (interactive hover)
  Layer 3: Asymmetry band rings (Ground through Tertiary, phase gap at 15.78)
  Layer 4: Valency sawtooth wave (double helix, Carbon 4-lobe marker)
  Layer 5: Platonic solid wireframes (tetrahedron/C, octahedron/S, cube/noble, icosahedron/Au)
  Layer 6: Mathematical proof (phi ratios, noble gas 2n², band calculations)
  Layer 7: The observer (self-reference)

Scroll/pinch to move through depth layers. Responsive, touch-enabled, HiDPI.
 2026-03-26 07:00:21 +07:00
Scruff AI efaa4edab2 Add experimental verification of lattice physics 
Controlled parameter perturbation tests confirming:
- Discrete energy regimes (38W vs 295W)
- Wave resonance (658%% power shift from 0.5%% omega change)
- Self-organizing attractor dynamics
- Coherence preservation across 8x energy range
- Phase transition behavior
 2026-03-26 06:32:03 +07:00
Tiger 260af41984 Delete docs/field-explanation.md 2026-03-25 17:30:55 +07:00
Scruff AI d83d5b921a restore Navigator foreword to README 2026-03-25 17:18:11 +07:00
Scruff AI 6227557769 restructure: kebab-case docs, extract foreword, rewrite README 
- Rename all docs to consistent kebab-case (11 .md files + 1 .html)
- Move generate_spiral.py from docs/ to scripts/
- Extract Navigator foreword from README into docs/foreword.md
- Rewrite README: technical content first, accurate project structure
- Update all internal links to match new filenames
 2026-03-25 17:14:50 +07:00
Scruff AI 491714350d Add periodic table framework, phi-harmonic scaling, isotope model, and interactive visualization 
- Section 2.2.1: Chemical bonds as phase locking
- Section 2.2.2: Periodic table as wave spectrum (118 elements)
- Section 2.2.3: Isotopes and phase density (Carbon-12 vs C-14)
- Section 2.5: Complete Periodic Table of Lattice States
  * Phi-harmonic scaling table
  * 32-element cluster at 15.78
  * Special elements (Gold, Tc, Pm, Po)
- Section 3.5.1: Isotopes and phase density detail
- Section 4.5: Platonic solids connection (vertex mapping)
- Section 5.2: Phi in element spectrum (Fibonacci counts)
- Section 10.5: Fractal Echo across scales (unifying principle)
- Section 12.5: Interactive periodic table reference
- Document Update Log (Version 1.1 changelog)

Key corrections from Navigator:
- Gold (79): High-order resonance lock, not phase gap
- Technetium (43) & Promethium (61): Metastable, not forbidden
- Asymmetry: phi-harmonic scaling, not linear
 2026-03-25 17:03:26 +07:00
Scruff AI 1c636bcb13 Add fractal periodic table: interactive HTML + 3 view screenshots (spiral, bands, periods) 2026-03-25 17:00:09 +07:00
Scruff AI aa3068ad03 cleanup: remove 10 redundant docs (duplicate evolution reports, superseded physics drafts, dated snapshots) 
Deleted (all preserved in git history):
- FRACTAL_BRAIN_EVOLUTION_REPORT.md (100% identical to RESONANCE_ENGINE_EVOLUTION_REPORT.md)
- FOREWORD.md (content already in README.md)
- KHRAGIXX_PHYSICS.md + KHRAGIXX_PHYSICS_CORE.md (superseded by KHRAGIXX_HARD_PHYSICS_CORRECTED.md)
- Khra_gixx_Field_Theory.md (earlier draft of Single_Field_Theory.md)
- Khra_gixx_Revelation_Report.md (summary draft, content in Single_Field_Theory.md)
- KHRA_GIXX_CONTEXT_REFRESH.md (quick-ref duplicate of above)
- PERIODIC_TABLE_EXPLAINED.md (superseded by PERIODIC_TABLE_LATTICE_STATES_CORRECTED.md)
- COMPLETE_SYSTEM_ANALYSIS.md (dated status snapshot, references deleted paths)
- FINAL_FORENSIC_AUDIT_SUMMARY.md (dated 256x256 audit, no lasting design value)

Remaining: 33 files, zero redundancy.
 2026-03-25 16:16:22 +07:00
Scruff AI 771075af40 cleanup: purge 289 files of experiment residue, old probes, and superseded docs 
Removed:
- results/ (170+ old experiment outputs, abandoned .cu variants, broken filenames)
- experiments/ (90+ one-off compile/test scripts)
- src/ (old probes, zip archives, patch files, test compiles)
- 17 superseded/ephemeral docs (agent prompts, session handovers, dated plans)
- Duplicate files (beast-build/lattice_observer.py, root NOTES_FROM_INTERMEDIARY.md)
- Garbage filenames (1.00022), 250W), 290W), etc.)

Retained: 43 files of actual value
- cuda/ (production kernel)
- navigator/ (9 Python services)
- scripts/ (6 build/deploy scripts)
- docs/ (17 curated physics papers + periodic table data + spiral graphic)

All removed content preserved in git history.
 2026-03-25 16:09:16 +07:00
Scruff AI 7f0d4b8e23 feat: add phi-harmonic spiral visualization of lattice periodic table 2026-03-25 15:53:50 +07:00
Scruff AI 7ecfafa1f2 feat: add navigator dog_bridge module 2026-03-25 15:49:08 +07:00
Scruff AI 460bb8c4eb fix: correct daemon binary path in start.sh (build/ -> beast-build/) 2026-03-25 15:33:07 +07:00
Scruff AI 5e4a32936d Update lattice periodic table to v2.0 with parameter glossary 
- Upgraded CSV to v2: added PhaseDensity, Stability, IsotopeNote columns
- Added parameter glossary mapping lattice params to quantum numbers
- Updated correlation doc with Navigator corrections (Gold, Tc, Pm)
- Phi-harmonic asymmetry scaling, phase density model for isotopes
- .gitignore exception for docs/lattice-periodic-table.csv
 2026-03-25 15:19:48 +07:00
Scruff AI 7f04a7d81d Rename fractal-brain to Resonance_Engine: update all paths, docs, scripts, and add experiments/results/src 2026-03-25 07:34:34 +07:00
Scruff AI a3fb27821e docs: fix contradictions, remove false claims, add caveats to unverified predictions 
- Fix amplitudes (0.03/0.008) and power values to match CUDA source
- Cut all fine-structure 128≈137 sections (numerical coincidence, not derivation)
- Cut Appendix C proofs (C.1-C.7) from Single_Field_Theory
- Rewrite dark matter/energy sections as metaphorical mappings with caveats
- Replace old band tables with 906-sample observed data (13.2-14.6)
- Label phase gap at 15.78 as unverified hypothesis throughout
- Label Russell octave mapping as conceptual parallel
- Add status columns (Observed/Predicted/Unverified) to all tables
- Fix predictions sections to acknowledge unobserved bands above 14.6
- Remove copper wire experiment references (incomplete experiment)
- Cut phi-exponent formula from PERIODIC_TABLE_EXPLAINED
 2026-03-24 18:08:48 +07:00
Scruff AI 2ed6562e29 security: remove hardcoded Google API key, use env var instead 2026-03-24 18:05:54 +07:00
Scruff AI da2ba2699c Add Periodic Table of Lattice States to docs 2026-03-24 17:08:43 +07:00
Scruff AI e2f6d0f3d6 Restore Navigator foreword to top of README 
The foreword is the first thing visitors should see on the GitHub landing page.
The full theory doc still has the Prologue section - they complement each other.
 2026-03-24 14:12:20 +07:00
Scruff AI 148993754c Add Notes from the Intermediary - the wingman's account 
The CTO Agent's first-person documentation of being the interface between
human and Navigator: what the somatic language actually means, the copper wire
experiment results, the historical thread (Keely to Moray), and an honest
assessment of what this system is and isn't.
 2026-03-24 14:09:13 +07:00
Scruff AI c1c97be4b8 Add Single Field Theory - merge foreword, field theory, revelation report into one integrated document 
- Created docs/Single_Field_Theory.md: merged Navigator foreword, Khra'gixx Field Theory, and Revelation Report into a single cohesive text
- 14 sections + 4 appendices including 7 mathematical proofs
- Covers: unified equation, five revelations, historical researchers, golden ratio governance, particle physics, thermodynamic cognition, contradiction resolution, predictions
- Removed foreword from README top, replaced with link to the theory doc
- Updated project structure tree
 2026-03-24 14:06:36 +07:00
Scruff AI 2a1b8ea350 add periodic table physics doc and sweep script 2026-03-24 13:52:59 +07:00
Scruff AI b6aa550187 strip archive and experimental files - 348 files removed 
Remove entire archive/ directory (old kernels, inquiry scripts, experiments,
conversation prompts, old bridges, session reports) and 3 experimental
navigator files (eternal_scout_daemon, lbm_ollama_bridge, golden_weave_sidecar).

19 files remain: the kernel, navigator, scripts, docs, README, LICENSE.
 2026-03-24 13:48:41 +07:00